Stimulated echo acquisition mode (STEAM) is a generic imaging technique that lies at the core of many magnetic resonance imaging (MRI) techniques such MRI tagging, displacement encoded MRI, black-blood cardiac imaging. Nevertheless, tissue deformation causes frequency shift of the MR signal and leads to severe signal attenuation. In this work, a maximum likelihood estimator for the signal amplitude is proposed and used to correct the image artifacts. Numerical simulation and real MR data are used to test and validate the proposed method. © 2011 IEEE.

In the last few years the gene expression microarray technology has become a central tool in the field of functional genomics in which the expression levels of thousands of genes in a biological sample are determined in a single experiment. Several clustering and biclustering methods have been introduced to analyze the gene expression data by identifying the similar patterns and grouping genes into subsets that share biological significance. However, it is not clear how the different methods compare with each other with respect to the biological relevance of the biclusters and clusters as well

Clusters of microcalcifications in mammograms are an important early sign of breast cancer in women. Comparing with microcalcifications, the breast background tissues have high local self-similarity, which is the basic property of fractal objects. A fast fractal modeling method of mammograms for detecting the presence of microcalcifications is proposed in this paper. The conventional fractal modeling method consumes too much computation time. In the proposed method, the image is divided into shade (homogeneous) and non-shade blocks based on the dynamic range and only the non-shade blocks are

We propose an Automatic Gene Ontology (AGO) software as a flexible, open-source Matlab software tool that allows the user to easily compare the results of the bicluster and cluster methods. This software provides several methods to differentiate and compare the results of candidate algorithms. The results reveal that bicluster/cluster algorithms could be considered as integrated modules to recover the interesting patterns in the microarray datasets. The further application of AGO could to solve the dimensionality reduction of the gene regulatory networks. Availability: AGO and help file is

The contribution of this paper is twofold. First, we provide new theoretical insights into the relationship between a string and its reverse: If the Burrows-Wheeler transform (BWT) of a string has been computed by sorting its suffixes, then the BWT and the longest common prefix array of the reverse string can be derived from it without suffix sorting. Furthermore, we show that the longest common prefix arrays of a string and its reverse are permutations of each other. Second, we provide a parallel algorithm that, given the BWT of a string, computes the BWT of its reverse much faster than all

Image denoising is of paramount importance in image processing. In this paper, we propose a new design technique for the design of Double density Discrete Wavelet Transform (DD DWT) AND DD CWT filter bank structure. These filter banks satisfy the perfect reconstruction as well as alias free properties of the DWT. Next, we utilized this filter bank structure in image denoising. Our denoising scheme is based on utilizing the interscale correlation/interscale dependence between wavelet coefficients of a DD DWT of the noisy image. This is known as the Bivariate Shrinkage scheme. More precisely, we

Cloud computing provides a promising solution to the big data problem associated with next generation sequencing applications. The increasing number of cloud service providers, who compete in terms of performance and price, is a clear indication of a growing market with high demand. However, current cloud computing based applications in bioinformatics do not profit from this progress, because they are still limited to just one cloud service provider. In this paper, we present different use case scenarios using hybrid services and resources from multiple cloud providers for bioinformatics

The internet of things (IoT) has provided a promising opportunity to build powerful systems and applications. Security is the main concern in IoT applications due to the privacy of exchanged data using limited resources of IoT devices (sensors/actuators). In this paper, we present a classification of IoT modes of operation based on the distribution of IoT devices, connectivity to the internet, and the typical field of application. It has been found that the majority of IoT services can be classified into one of four IoT modes: Gateway, device to device, collaborative, and centralized. The

Human action recognition is an important area of research in computer vision. Its applications include surveillance systems, patient monitoring, human-computer interaction, just to name a few. Numerous techniques have been developed to solve this problem in 2D and 3D spaces. However 3D imaging gained a lot of interest nowadays. In this paper we propose a novel view-independent action recognition algorithm based on fusion between a global feature and a graph based feature. We used the motion history of skeleton volumes; we compute a skeleton for each volume and a motion history for each action